epymorph.parameter_fitting.output

ParticleFilterOutput dataclass

ParticleFilterOutput(
    num_particles: int,
    parameters_estimated: list,
    duration: str,
    param_quantiles: Dict[str, List[float]],
    param_values: Dict[str, List[float]],
    true_data: ndarray,
    model_data: ndarray,
)

Encapulates the particle filter output.

Attributes:

• num_particles (int) –

  The number of particles used in the particle filter.

• parameters_estimated (list) –

  The parameters which were estimated.

• duration (str) –

  The total duration of the particle filter simulation.

• param_quantiles (Dict[str, List[float]]) –

  The estimated quantiles of each parameter at each observation time.

• param_values (Dict[str, List[float]]) –

  The estimated average of each parameter at each observation time.

• true_data (ndarray) –

  The observed data which was used by the particle filter.

• model_data (ndarray) –

  The prediced data from the particle filter.

num_particles instance-attribute

num_particles: int

parameters_estimated instance-attribute

parameters_estimated: list

duration instance-attribute

duration: str

param_quantiles instance-attribute

param_quantiles: Dict[str, List[float]]

param_values instance-attribute

param_values: Dict[str, List[float]]

true_data instance-attribute

true_data: ndarray

model_data instance-attribute

model_data: ndarray